The license is the GNU General Public License, with the or-later option, see COPYING for details.

There are four main scripts:

  * construct-diffusion-map.py

    This script takes ithildin simulation data and some parameters as input
    and calculates a diffusion map as output.

  * plot-diffusion-map.py

    This script takes a diffusion map as input and visualises it with various
    plots.

  * plot-some-times.py, all-the-plots.sh

    This generates all plots for the paper, and some more.

TODO:

  * Publiceren: https://gitlab.kuleuven.be/heartkor?
  * https://gitlab.com/heartkor/ <iets> ?
  * probably some (all?) of the gc.collect() are pointless.